IL_6SWA_181

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGAAG*CCCUUGAAAAUCC

Length

20 nucleotides

Bulged bases

6SWA|1|q|C|2718, 6SWA|1|q|U|2719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|2575
6SWA|1|q|G|2576
6SWA|1|q|A|2577
6SWA|1|q|G|2578
6SWA|1|q|A|2579
6SWA|1|q|A|2580
6SWA|1|q|G|2581
*
6SWA|1|q|C|2716
6SWA|1|q|C|2717
6SWA|1|q|C|2718
6SWA|1|q|U|2719
6SWA|1|q|U|2720
6SWA|1|q|G|2721
6SWA|1|q|A|2722
6SWA|1|q|A|2723
6SWA|1|q|A|2724
6SWA|1|q|A|2725
6SWA|1|q|U|2726
6SWA|1|q|C|2727
6SWA|1|q|C|2728

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain e

60S ribosomal protein L34

Chain n

60S ribosomal protein L37a