IL_6SWA_183

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6SWA|1|q|G|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_183 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1352

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6SWA|1|q|G|2826
6SWA|1|q|G|2827
6SWA|1|q|A|2828
6SWA|1|q|A|2829
6SWA|1|q|G|2830
6SWA|1|q|U|2831
6SWA|1|q|C|2832
6SWA|1|q|G|2833
6SWA|1|q|G|2834
*
6SWA|1|q|C|3808
6SWA|1|q|U|3809
6SWA|1|q|G|3810
6SWA|1|q|U|3811
6SWA|1|q|C|3812

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain T

60S ribosomal protein L23