IL_6SWA_192

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCCUCGGAUAGCCGGUC*GGUCCGGUGCGGAGUGC

Length

35 nucleotides

Bulged bases

6SWA|1|q|C|4718, 6SWA|1|q|C|4719, 6SWA|1|q|U|4725, 6SWA|1|q|U|4827, 6SWA|1|q|G|4828, 6SWA|1|q|G|4830, 6SWA|1|q|G|4833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|4716
6SWA|1|q|G|4717
6SWA|1|q|C|4718
6SWA|1|q|C|4719
6SWA|1|q|U|4720
6SWA|1|q|C|4721
6SWA|1|q|G|4722
6SWA|1|q|G|4723
6SWA|1|q|A|4724
6SWA|1|q|U|4725
6SWA|1|q|A|4726
6SWA|1|q|G|4727
6SWA|1|q|C|4728
6SWA|1|q|C|4729
6SWA|1|q|G|4730
6SWA|1|q|G|4731
6SWA|1|q|U|4732
6SWA|1|q|C|4733
*
6SWA|1|q|G|4820
6SWA|1|q|G|4821
6SWA|1|q|U|4822
6SWA|1|q|C|4823
6SWA|1|q|C|4824
6SWA|1|q|G|4825
6SWA|1|q|G|4826
6SWA|1|q|U|4827
6SWA|1|q|G|4828
6SWA|1|q|C|4829
6SWA|1|q|G|4830
6SWA|1|q|G|4831
6SWA|1|q|A|4832
6SWA|1|q|G|4833
6SWA|1|q|U|4834
6SWA|1|q|G|4835
6SWA|1|q|C|4836

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain E

60S ribosomal protein L6

Chain H

60S ribosomal protein L9

Chain L

60S ribosomal protein L14

Chain N

60S ribosomal protein L13a

Chain Q

60S ribosomal protein L18a

Chain d

60S ribosomal protein L35a