IL_6SWA_194

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_194 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.2339

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6SWA|1|q|G|127
6SWA|1|q|C|128
6SWA|1|q|C|129
*
6SWA|1|q|G|139
6SWA|1|q|U|140

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain G

60S ribosomal protein L7a

Chain V

60S ribosomal protein L23a

Chain f

60S ribosomal protein L35