IL_6SWA_196

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGGCCCGG*UCCC

Length

13 nucleotides

Bulged bases

6SWA|1|q|C|492, 6SWA|1|q|C|495, 6SWA|1|q|C|496, 6SWA|1|q|C|497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_196 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.3798

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61988.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6SWA|1|q|G|491
6SWA|1|q|C|492
6SWA|1|q|G|493
6SWA|1|q|G|494
6SWA|1|q|C|495
6SWA|1|q|C|496
6SWA|1|q|C|497
6SWA|1|q|G|498
6SWA|1|q|G|499
*
6SWA|1|q|U|647
6SWA|1|q|C|648
6SWA|1|q|C|649
6SWA|1|q|C|650

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain P

60S ribosomal protein L18