IL_6SWD_011

3D structure

PDB id

6SWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAGG*C(4AC)GAAGAUC

Length

16 nucleotides

Bulged bases

6SWD|1|2|U|253, 6SWD|1|2|A|289

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWD|1|2|G|251
6SWD|1|2|A|252
6SWD|1|2|U|253
6SWD|1|2|U|254
6SWD|1|2|A|255
6SWD|1|2|G|256
6SWD|1|2|G|257
*
6SWD|1|2|C|285
6SWD|1|2|4AC|286
6SWD|1|2|G|287
6SWD|1|2|A|288
6SWD|1|2|A|289
6SWD|1|2|G|290
6SWD|1|2|A|291
6SWD|1|2|U|292
6SWD|1|2|C|293

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12

Chain R

30S ribosomal protein S17