3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_006 not in the Motif Atlas
Homologous match to IL_7RQB_006
Geometric discrepancy: 0.0673
The information below is about IL_7RQB_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6SZS|1|A|G|188
6SZS|1|A|G|189
6SZS|1|A|A|190
6SZS|1|A|A|191
6SZS|1|A|C|192
6SZS|1|A|U|193
6SZS|1|A|G|194
*
6SZS|1|A|C|201
6SZS|1|A|U|202
6SZS|1|A|A|203
6SZS|1|A|A|204
6SZS|1|A|G|205
6SZS|1|A|U|206
6SZS|1|A|A|207
6SZS|1|A|C|208

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain X
50S ribosomal protein L28

Coloring options:


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