3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CAG*CGAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_008 not in the Motif Atlas
Homologous match to IL_5J7L_252
Geometric discrepancy: 0.2322
The information below is about IL_5J7L_252
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47972.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

6SZS|1|A|C|269
6SZS|1|A|A|270
6SZS|1|A|G|271
*
6SZS|1|A|C|366
6SZS|1|A|G|367
6SZS|1|A|A|368
6SZS|1|A|U|369
6SZS|1|A|G|370

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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