IL_6SZS_009

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6SZS|1|A|U|276, 6SZS|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4501

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6SZS|1|A|C|274
6SZS|1|A|C|275
6SZS|1|A|U|276
6SZS|1|A|G|277
6SZS|1|A|A|278
6SZS|1|A|A|279
6SZS|1|A|U|280
6SZS|1|A|C|281
*
6SZS|1|A|G|359
6SZS|1|A|U|360
6SZS|1|A|G|361
6SZS|1|A|A|362
6SZS|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains