3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
6SZS|1|A|A|504, 6SZS|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_011 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.0749
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

6SZS|1|A|G|481
6SZS|1|A|A|482
6SZS|1|A|A|483
6SZS|1|A|C|484
*
6SZS|1|A|G|496
6SZS|1|A|A|497
6SZS|1|A|G|498
6SZS|1|A|U|499
6SZS|1|A|G|500
6SZS|1|A|A|501
6SZS|1|A|A|502
6SZS|1|A|A|503
6SZS|1|A|A|504
6SZS|1|A|A|505
6SZS|1|A|G|506
6SZS|1|A|A|507
6SZS|1|A|A|508
6SZS|1|A|C|509

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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