3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6SZS|1|A|A|1127, 6SZS|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_036 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0791
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6SZS|1|A|G|1024
6SZS|1|A|G|1025
6SZS|1|A|G|1026
6SZS|1|A|A|1027
6SZS|1|A|A|1028
6SZS|1|A|A|1029
6SZS|1|A|C|1030
*
6SZS|1|A|G|1124
6SZS|1|A|G|1125
6SZS|1|A|A|1126
6SZS|1|A|A|1127
6SZS|1|A|G|1128
6SZS|1|A|A|1129
6SZS|1|A|U|1130
6SZS|1|A|G|1131
6SZS|1|A|U|1132
6SZS|1|A|A|1133
6SZS|1|A|A|1134
6SZS|1|A|C|1135
6SZS|1|A|G|1136
6SZS|1|A|G|1137
6SZS|1|A|G|1138
6SZS|1|A|G|1139
6SZS|1|A|C|1140

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16

Coloring options:


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