IL_6SZS_043

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

6SZS|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_043 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1008

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

6SZS|1|A|G|1202
6SZS|1|A|U|1203
6SZS|1|A|A|1204
6SZS|1|A|A|1205
6SZS|1|A|G|1206
*
6SZS|1|A|U|1240
6SZS|1|A|A|1241
6SZS|1|A|U|1242
6SZS|1|A|C|1243

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15