3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
6SZS|1|A|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_064 not in the Motif Atlas
Homologous match to IL_5J7L_308
Geometric discrepancy: 0.0751
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6SZS|1|A|C|1686
6SZS|1|A|G|1687
6SZS|1|A|U|1688
6SZS|1|A|A|1689
6SZS|1|A|A|1690
6SZS|1|A|C|1691
*
6SZS|1|A|G|1696
6SZS|1|A|G|1697
6SZS|1|A|A|1698
6SZS|1|A|G|1699
6SZS|1|A|A|1700
6SZS|1|A|A|1701
6SZS|1|A|G|1702

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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