3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
6SZS|1|A|U|2068
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_078 not in the Motif Atlas
Homologous match to IL_7A0S_075
Geometric discrepancy: 0.1142
The information below is about IL_7A0S_075
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_97561.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

6SZS|1|A|G|2067
6SZS|1|A|U|2068
6SZS|1|A|G|2069
*
6SZS|1|A|C|2442
6SZS|1|A|C|2443

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:


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