IL_6SZS_082

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GUGUAGGAUAGGUGG*CCACCC

Length

21 nucleotides

Bulged bases

6SZS|1|A|U|2111, 6SZS|1|A|G|2116, 6SZS|1|A|A|2117, 6SZS|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SZS|1|A|G|2110
6SZS|1|A|U|2111
6SZS|1|A|G|2112
6SZS|1|A|U|2113
6SZS|1|A|A|2114
6SZS|1|A|G|2115
6SZS|1|A|G|2116
6SZS|1|A|A|2117
6SZS|1|A|U|2118
6SZS|1|A|A|2119
6SZS|1|A|G|2120
6SZS|1|A|G|2121
6SZS|1|A|U|2122
6SZS|1|A|G|2123
6SZS|1|A|G|2124
*
6SZS|1|A|C|2174
6SZS|1|A|C|2175
6SZS|1|A|A|2176
6SZS|1|A|C|2177
6SZS|1|A|C|2178
6SZS|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains