3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GGUG*CUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_107 not in the Motif Atlas
Homologous match to IL_5J7L_353
Geometric discrepancy: 0.0626
The information below is about IL_5J7L_353
Detailed Annotation
Multiple bulged bases with non-canonical cWW
Broad Annotation
Multiple bulged bases with non-canonical cWW
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

6SZS|1|A|G|2843
6SZS|1|A|G|2844
6SZS|1|A|U|2845
6SZS|1|A|G|2846
*
6SZS|1|A|C|2870
6SZS|1|A|U|2871
6SZS|1|A|A|2872
6SZS|1|A|A|2873
6SZS|1|A|C|2874

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L17
Chain P
50S ribosomal protein L19

Coloring options:


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