IL_6SZS_121

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

6SZS|1|a|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_121 not in the Motif Atlas

Geometric match to IL_5DEA_002

Geometric discrepancy: 0.2517

The information below is about IL_5DEA_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6SZS|1|a|G|75
6SZS|1|a|G|76
*
6SZS|1|a|U|93
6SZS|1|a|G|94
6SZS|1|a|C|95

Current chains

Chain a

16S ribosomal RNA

Nearby chains