3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CUGCC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_123 not in the Motif Atlas
Homologous match to IL_5J7L_010
Geometric discrepancy: 0.0935
The information below is about IL_5J7L_010
Detailed Annotation
Minor groove platform related
Broad Annotation
Minor groove platform related
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

6SZS|1|a|C|132
6SZS|1|a|U|133
6SZS|1|a|G|134
6SZS|1|a|C|135
6SZS|1|a|C|136
*
6SZS|1|a|G|227
6SZS|1|a|A|228
6SZS|1|a|U|229
6SZS|1|a|G|230

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


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