IL_6SZS_133

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_133 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6SZS|1|a|U|409
6SZS|1|a|G|410
6SZS|1|a|A|411
6SZS|1|a|A|412
6SZS|1|a|G|413
6SZS|1|a|A|414
6SZS|1|a|A|415
6SZS|1|a|G|416
*
6SZS|1|a|U|427
6SZS|1|a|G|428
6SZS|1|a|U|429
6SZS|1|a|A|430
6SZS|1|a|A|431
6SZS|1|a|A|432
6SZS|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4