IL_6SZS_183

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

AGCCUUGAUG*CUUUAAUGUU

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SZS|1|A|A|2101
6SZS|1|A|G|2102
6SZS|1|A|C|2103
6SZS|1|A|C|2104
6SZS|1|A|U|2105
6SZS|1|A|U|2106
6SZS|1|A|G|2107
6SZS|1|A|A|2108
6SZS|1|A|U|2109
6SZS|1|A|G|2110
*
6SZS|1|A|C|2179
6SZS|1|A|U|2180
6SZS|1|A|U|2181
6SZS|1|A|U|2182
6SZS|1|A|A|2183
6SZS|1|A|A|2184
6SZS|1|A|U|2185
6SZS|1|A|G|2186
6SZS|1|A|U|2187
6SZS|1|A|U|2188

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9