IL_6SZS_184

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GGAGGCUUUGAAGUG*CAUGGAGCCGACCUUGAAAUAC

Length

37 nucleotides

Bulged bases

6SZS|1|A|U|2132, 6SZS|1|A|A|2171, 6SZS|1|A|U|2172, 6SZS|1|A|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SZS|1|A|G|2124
6SZS|1|A|G|2125
6SZS|1|A|A|2126
6SZS|1|A|G|2127
6SZS|1|A|G|2128
6SZS|1|A|C|2129
6SZS|1|A|U|2130
6SZS|1|A|U|2131
6SZS|1|A|U|2132
6SZS|1|A|G|2133
6SZS|1|A|A|2134
6SZS|1|A|A|2135
6SZS|1|A|G|2136
6SZS|1|A|U|2137
6SZS|1|A|G|2138
*
6SZS|1|A|C|2153
6SZS|1|A|A|2154
6SZS|1|A|U|2155
6SZS|1|A|G|2156
6SZS|1|A|G|2157
6SZS|1|A|A|2158
6SZS|1|A|G|2159
6SZS|1|A|C|2160
6SZS|1|A|C|2161
6SZS|1|A|G|2162
6SZS|1|A|A|2163
6SZS|1|A|C|2164
6SZS|1|A|C|2165
6SZS|1|A|U|2166
6SZS|1|A|U|2167
6SZS|1|A|G|2168
6SZS|1|A|A|2169
6SZS|1|A|A|2170
6SZS|1|A|A|2171
6SZS|1|A|U|2172
6SZS|1|A|A|2173
6SZS|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains