IL_6T3K_009

3D structure

PDB id

6T3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGAG*CAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3K_009 not in the Motif Atlas

Homologous match to IL_5J02_008

Geometric discrepancy: 0.1342

The information below is about IL_5J02_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T3K|1|A|U|172
6T3K|1|A|G|173
6T3K|1|A|A|174
6T3K|1|A|G|175
*
6T3K|1|A|C|190
6T3K|1|A|A|191
6T3K|1|A|A|192
6T3K|1|A|A|193
6T3K|1|A|G|194

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains