IL_6T3N_008

3D structure

PDB id

6T3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UG*CUUUCUGCCAAG*G

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3N_008 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.1911

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T3N|1|A|U|168
6T3N|1|A|G|169
*
6T3N|1|A|C|197
6T3N|1|A|U|198
6T3N|1|A|U|199
6T3N|1|A|U|200
6T3N|1|A|C|201
6T3N|1|A|U|202
6T3N|1|A|G|203
6T3N|1|A|C|204
6T3N|1|A|C|205
6T3N|1|A|A|206
6T3N|1|A|A|208
6T3N|1|A|G|209
*
6T3N|1|A|G|209

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains