IL_6T3N_013

3D structure

PDB id

6T3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3N_013 not in the Motif Atlas

Geometric match to IL_4K27_004

Geometric discrepancy: 0.1494

The information below is about IL_4K27_004

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6T3N|1|A|U|332
6T3N|1|A|A|333
6T3N|1|A|U|334
6T3N|1|A|G|335
*
6T3N|1|A|C|346
6T3N|1|A|U|347
6T3N|1|A|A|348
6T3N|1|A|A|349
6T3N|1|A|G|350

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains