IL_6T3R_008

3D structure

PDB id

6T3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.57 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

6T3R|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3R_008 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.1853

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T3R|1|A|U|168
6T3R|1|A|G|169
*
6T3R|1|A|C|197
6T3R|1|A|U|198
6T3R|1|A|U|199
6T3R|1|A|U|200
6T3R|1|A|C|201
6T3R|1|A|U|202
6T3R|1|A|G|203
6T3R|1|A|C|204
6T3R|1|A|C|205
6T3R|1|A|A|206
6T3R|1|A|A|207
6T3R|1|A|A|208
6T3R|1|A|G|209

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains