IL_6T4Q_011

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6T4Q|1|C1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_011 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.2731

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6T4Q|1|C1|U|169
6T4Q|1|C1|G|170
*
6T4Q|1|C1|U|248
6T4Q|1|C1|U|249
6T4Q|1|C1|U|250
6T4Q|1|C1|G|251
6T4Q|1|C1|U|252
6T4Q|1|C1|A|253

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8-A

Chain LL

60S ribosomal protein L13-A

Chain Lh

60S ribosomal protein L35-A