IL_6T4Q_012

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_012 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.3708

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6T4Q|1|C1|U|177
6T4Q|1|C1|U|178
*
6T4Q|1|C1|A|238
6T4Q|1|C1|G|239
6T4Q|1|C1|U|240
6T4Q|1|C1|G|241

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain Lh

60S ribosomal protein L35-A

Chain Lj

60S ribosomal protein L37-A