3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
6T4Q|1|C1|A|519, 6T4Q|1|C1|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T4Q_019 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.0937
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6T4Q|1|C1|G|517
6T4Q|1|C1|G|518
6T4Q|1|C1|A|519
6T4Q|1|C1|U|520
6T4Q|1|C1|A|521
6T4Q|1|C1|A|522
6T4Q|1|C1|A|523
6T4Q|1|C1|U|524
6T4Q|1|C1|C|525
*
6T4Q|1|C1|G|567
6T4Q|1|C1|G|568
6T4Q|1|C1|A|569
6T4Q|1|C1|A|570
6T4Q|1|C1|U|571
6T4Q|1|C1|A|572
6T4Q|1|C1|C|573

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4-A
Chain LF
60S ribosomal protein L7-A
Chain LM
60S ribosomal protein L14-A
Chain LS
60S ribosomal protein L20-A

Coloring options:


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