IL_6T4Q_037

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

6T4Q|1|C1|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_037 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0821

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6T4Q|1|C1|A|983
6T4Q|1|C1|G|984
6T4Q|1|C1|U|985
*
6T4Q|1|C1|A|1099
6T4Q|1|C1|U|1100

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7-A

Chain LQ

60S ribosomal protein L18-A

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29