IL_6T4Q_085

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_085 not in the Motif Atlas

Homologous match to IL_8C3A_091

Geometric discrepancy: 0.2714

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6T4Q|1|C1|C|2204
6T4Q|1|C1|U|2205
6T4Q|1|C1|G|2206
*
6T4Q|1|C1|C|2237
6T4Q|1|C1|G|2238

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A

Chain SB

40S ribosomal protein S1-A