IL_6T4Q_086
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- 6T4Q|1|C1|U|2209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T4Q_086 not in the Motif Atlas
- Homologous match to IL_8C3A_092
- Geometric discrepancy: 0.4415
- The information below is about IL_8C3A_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58579.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6T4Q|1|C1|G|2206
6T4Q|1|C1|A|2207
6T4Q|1|C1|A|2208
6T4Q|1|C1|U|2209
6T4Q|1|C1|G|2210
*
6T4Q|1|C1|C|2235
6T4Q|1|C1|G|2236
6T4Q|1|C1|C|2237
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-A
- Chain SB
- 40S ribosomal protein S1-A
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