3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CA*UAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T4Q_095 not in the Motif Atlas
Geometric match to IL_7RQB_058
Geometric discrepancy: 0.3529
The information below is about IL_7RQB_058
Detailed Annotation
Single stack bend
Broad Annotation
Single stack bend
Motif group
IL_76488.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
36

Unit IDs

6T4Q|1|C1|C|2444
6T4Q|1|C1|A|2445
*
6T4Q|1|C1|U|2501
6T4Q|1|C1|A|2502
6T4Q|1|C1|G|2503

Current chains

Chain C1
25S rRNA

Nearby chains

Chain Li
60S ribosomal protein L36-A

Coloring options:


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