IL_6T4Q_096
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 6T4Q|1|C1|G|2522, 6T4Q|1|C1|G|2585, 6T4Q|1|C1|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T4Q_096 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.0894
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6T4Q|1|C1|A|2520
6T4Q|1|C1|U|2521
6T4Q|1|C1|G|2522
6T4Q|1|C1|A|2523
6T4Q|1|C1|A|2524
6T4Q|1|C1|G|2525
6T4Q|1|C1|C|2526
*
6T4Q|1|C1|G|2584
6T4Q|1|C1|G|2585
6T4Q|1|C1|G|2586
6T4Q|1|C1|U|2587
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L2-A
- Chain LG
- 60S ribosomal protein L8-A
- Chain LX
- 60S ribosomal protein L25
Coloring options: