IL_6T4Q_101

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_101 not in the Motif Atlas

Homologous match to IL_5TBW_102

Geometric discrepancy: 0.1303

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6T4Q|1|C1|G|2823
6T4Q|1|C1|G|2824
*
6T4Q|1|C1|U|2865
6T4Q|1|C1|U|2866
6T4Q|1|C1|C|2867

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lb

60S ribosomal protein L29