IL_6T4Q_108

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6T4Q|1|C1|A|2941, 6T4Q|1|C1|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_108 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0672

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6T4Q|1|C1|C|2881
6T4Q|1|C1|U|2882
*
6T4Q|1|C1|A|2940
6T4Q|1|C1|A|2941
6T4Q|1|C1|C|2942
6T4Q|1|C1|G|2943

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23-A