IL_6T4Q_125

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

6T4Q|1|C1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_125 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.1086

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6T4Q|1|C1|C|3225
6T4Q|1|C1|A|3226
6T4Q|1|C1|A|3227
6T4Q|1|C1|C|3228
6T4Q|1|C1|G|3229
*
6T4Q|1|C1|U|3258
6T4Q|1|C1|U|3259
6T4Q|1|C1|G|3260

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6-B

Chain LM

60S ribosomal protein L14-A

Chain LO

60S ribosomal protein L16-A