IL_6T4Q_163

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

6T4Q|1|C2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_163 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2972

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6T4Q|1|C2|G|514
6T4Q|1|C2|A|515
6T4Q|1|C2|G|516
*
6T4Q|1|C2|C|536
6T4Q|1|C2|G|537
6T4Q|1|C2|A|538
6T4Q|1|C2|G|539
6T4Q|1|C2|G|540
6T4Q|1|C2|A|541
6T4Q|1|C2|A|542
6T4Q|1|C2|C|543

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A