3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
6T4Q|1|C2|U|1269
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T4Q_199 not in the Motif Atlas
Homologous match to IL_4V88_449
Geometric discrepancy: 0.152
The information below is about IL_4V88_449
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6T4Q|1|C2|G|1268
6T4Q|1|C2|U|1269
6T4Q|1|C2|G|1270
*
6T4Q|1|C2|C|1440
6T4Q|1|C2|C|1441

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SK
40S ribosomal protein S10-A
Chain Sd
40S ribosomal protein S29-A
Chain Sf
Ubiquitin-40S ribosomal protein S31

Coloring options:


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