IL_6T4Q_207

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_207 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.2162

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T4Q|1|C2|G|1352
6T4Q|1|C2|U|1353
6T4Q|1|C2|G|1354
*
6T4Q|1|C2|U|1369
6T4Q|1|C2|U|1370
6T4Q|1|C2|A|1371
6T4Q|1|C2|U|1372
6T4Q|1|C2|C|1373

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain ST

40S ribosomal protein S19-A

Chain SU

40S ribosomal protein S20