IL_6T4Q_212

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_212 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1067

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6T4Q|1|C2|G|1540
6T4Q|1|C2|G|1541
6T4Q|1|C2|G|1542
6T4Q|1|C2|A|1543
6T4Q|1|C2|U|1544
6T4Q|1|C2|A|1545
*
6T4Q|1|C2|U|1566
6T4Q|1|C2|U|1567
6T4Q|1|C2|C|1568
6T4Q|1|C2|A|1569
6T4Q|1|C2|A|1570
6T4Q|1|C2|C|1571

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18-A

Chain ST

40S ribosomal protein S19-A

Chain SZ

40S ribosomal protein S25-A