IL_6T4Q_220

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_220 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.1116

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T4Q|1|C2|U|1665
6T4Q|1|C2|U|1666
6T4Q|1|C2|A|1667
*
6T4Q|1|C2|U|1734
6T4Q|1|C2|U|1735
6T4Q|1|C2|G|1736

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23-A

Chain SI

40S ribosomal protein S8-A