IL_6T4Q_238

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_238 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0578

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6T4Q|1|C1|G|1898
6T4Q|1|C1|G|1899
6T4Q|1|C1|A|1900
6T4Q|1|C1|A|1901
6T4Q|1|C1|G|1902
6T4Q|1|C1|U|1903
6T4Q|1|C1|C|1904
6T4Q|1|C1|G|1905
6T4Q|1|C1|G|1906
*
6T4Q|1|C1|C|2333
6T4Q|1|C1|U|2334
6T4Q|1|C1|G|2335
6T4Q|1|C1|U|2336
6T4Q|1|C1|C|2337

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23-A