IL_6T7I_029

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

6T7I|1|C1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_029 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.1076

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6T7I|1|C1|G|833
6T7I|1|C1|U|834
*
6T7I|1|C1|G|859
6T7I|1|C1|G|860
6T7I|1|C1|C|861

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LR

60S ribosomal protein L19-A

Chain Lp

60S ribosomal protein L43-A