IL_6T7I_094

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_094 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.2906

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T7I|1|C1|A|2447
6T7I|1|C1|G|2448
6T7I|1|C1|A|2449
*
6T7I|1|C1|U|2497
6T7I|1|C1|U|2498
6T7I|1|C1|U|2499

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S1-A