IL_6T7I_180

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_180 not in the Motif Atlas

Homologous match to IL_4V88_433

Geometric discrepancy: 0.219

The information below is about IL_4V88_433

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T7I|1|C2|U|893
6T7I|1|C2|U|894
6T7I|1|C2|G|895
*
6T7I|1|C2|U|917
6T7I|1|C2|U|918
6T7I|1|C2|A|919

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A