IL_6T7I_205

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_205 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.1906

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T7I|1|C2|G|1352
6T7I|1|C2|U|1353
6T7I|1|C2|G|1354
*
6T7I|1|C2|U|1369
6T7I|1|C2|U|1370
6T7I|1|C2|A|1371
6T7I|1|C2|U|1372
6T7I|1|C2|C|1373

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain ST

40S ribosomal protein S19-A

Chain SU

40S ribosomal protein S20