IL_6T7I_245

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

6T7I|1|C1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_245 not in the Motif Atlas

Geometric match to IL_4V9F_072

Geometric discrepancy: 0.3549

The information below is about IL_4V9F_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

6T7I|1|C1|G|1623
6T7I|1|C1|G|1624
6T7I|1|C1|A|1625
*
6T7I|1|C1|U|1818
6T7I|1|C1|U|1819
6T7I|1|C1|U|1820
6T7I|1|C1|U|1821
6T7I|1|C1|C|1822

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A