IL_6T7T_010

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6T7T|1|C1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.3253

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6T7T|1|C1|U|169
6T7T|1|C1|G|170
*
6T7T|1|C1|U|248
6T7T|1|C1|U|249
6T7T|1|C1|U|250
6T7T|1|C1|G|251
6T7T|1|C1|U|252
6T7T|1|C1|A|253

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8-A

Chain LL

60S ribosomal protein L13-A

Chain Lh

60S ribosomal protein L35-A