IL_6T7T_011

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_011 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.3505

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6T7T|1|C1|U|177
6T7T|1|C1|U|178
*
6T7T|1|C1|A|238
6T7T|1|C1|G|239
6T7T|1|C1|U|240
6T7T|1|C1|G|241

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain Lh

60S ribosomal protein L35-A

Chain Lj

60S ribosomal protein L37-A