3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
6T7T|1|C1|A|519, 6T7T|1|C1|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T7T_019 not in the Motif Atlas
Geometric match to IL_5TBW_019
Geometric discrepancy: 0.1011
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6T7T|1|C1|G|517
6T7T|1|C1|G|518
6T7T|1|C1|A|519
6T7T|1|C1|U|520
6T7T|1|C1|A|521
6T7T|1|C1|A|522
6T7T|1|C1|A|523
6T7T|1|C1|U|524
6T7T|1|C1|C|525
*
6T7T|1|C1|G|567
6T7T|1|C1|G|568
6T7T|1|C1|A|569
6T7T|1|C1|A|570
6T7T|1|C1|U|571
6T7T|1|C1|A|572
6T7T|1|C1|C|573

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4-A
Chain LF
60S ribosomal protein L7-A
Chain LM
60S ribosomal protein L14-A
Chain LS
60S ribosomal protein L20-A

Coloring options:


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